Transcriptome and Genome Analyses Applied to Aquaculture Research
Pereiro, Patricia (editor)
Aquaculture is an important economic activity for food production all around the world that has experienced an exponential growth during the last few decades. However, several weaknesses and bottlenecks still need to be addressed in order to improve the aquaculture productive system. The recent fast development of the omics technologies has provided scientists with meaningful tools to elucidate the molecular basis of their research interests. This reprint compiles different works about the use of transcriptomics and genomics technologies in different aspects of the aquaculture research, such as immunity, stress response, development, sexual dimorphism, among others, in a variety of fish and shellfish, and even in turtles. Different transcriptome (mRNAs and non-coding RNAs (ncRNAs)), genome (Single Nucleotide Polymorphisms (SNPs)), and metatranscriptome analyses were conducted to unravel those different aspects of interest.
KeywordsRNA-Seq; lncRNAs; Dicentrarchus labrax; viral infection; nodavirus; immune response; fish; T lymphocytes; infection; malnutrition; inflammation; aquaculture; histopathology; immunohistochemistry; enteromyxosis; Philasterides dicentrarchi; turbot; transcriptomics; Chinese mitten crab; Eriocheir sinensis; transportome; transporters; salinity; osmoregulation; transcriptome; meta-analysis; gills; short pentraxins; c-reactive protein; zebrafish; transcript expression; antiviral; SVCV; rag1 mutants; skin; mucosal immunity; hypoxia; hypo-metabolic state; growth; swimming performance; metabolic landmarks; muscle transcriptome; glycolysis; lipid metabolism; protein turnover; gilthead sea bream; hepatopancreas necrosis disease; metatranscriptomics sequencing; hepatopancreatic flora; teleost; B cells; single cell transcriptomics; immunoglobulins; immune markers; transcription factors; long non-coding RNAs; hepatic transcript expression; salmon; microarray; omega-6/omega-3 ratio; nutrigenomics; fatty acids; liver; muscle; Misgurnus anguillicaudatus; sexual size dimorphism; polyploid size dimorphism; comparative transcriptome; gene expression; edible red sea urchin; Loxechinus albus; RNA-seq; reference transcriptome; Chinese soft-shelled turtle; Aeromonas hydrophila; hemorrhagic sepsis; molecular immunopathogenesis; tripartite motif proteins; B30.2 domain; antiviral immunity; Ctenopharyngodon idella; grass carp reovirus; metamorphosis; brain; RNA; sequencing; intermuscular bone; development; Megalobrama amblycephala; Oreochromis niloticus; histological structure; Atlantic salmon; smoltification; genome; mRNAs; miRNAs; sox family genes; Pelodiscus sinensis; estradiol; pseudo-female; sex-related; heterosis; heterobeltiosis; environment; transgressive genes; conserved miRNA; high-throughput sequencing; lumpfish; novel miRNA; RT-qPCR; heat shock protein; co-chaperon network; salinity-alkalinity adaptation; molecular evolution; Lateolabrax maculatus; genomics; stress response; HPI-axis; neuroendocrine-immune interaction; common carp; poly-unsaturated fatty acid; fatty acid elongase; association study; genomic selection; bulked segregant analysis; SNP; association analysis; joint effect; seawater adaptation; microRNAs; small-RNA sequencing; microarray transcriptome; European seabass; chronic inflammation; opioid receptors; immune status; whole-transcriptome sequencing; sex differentiation; non-coding RNAs; ceRNA; red cusk-eel; thermal stress; liver transcriptome; oxidative damage; protein folding; hepatic enzymes; n/a
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Publication date and placeBasel, 2022
Research & information: general
Biology, life sciences
Fisheries & related industries